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Stephan Saalfeld

@herrsaalfeld@mastodon.social
mastodon 4.8.0-nightly.2026-10-06
  • Open on mastodon.social

scalable image analysis, ML, software design at HHMI Janelia

0 Followers
0 Following
4 Posts
Joined February 15, 2023
Job:
https://www.janelia.org/lab/saalfeld-lab
GitHub:
https://github.com/axtimwalde
PGP:
E912 500E B791 3D81 4CDD 29A8 D84E 640A E9FA 00A2
Previously:
https://qoto.org/@herrsaalfeld
Open post
Stephan Saalfeld @herrsaalfeld@mastodon.social
· 7mo ago

If your imaging system has poorly characterized constant distortions leading to chromatic aberration, shoddy stitching, or false measurements (the answer is likely yes), you may want to give these tools a try: https://github.com/saalfeldlab/lens-correct
The split-image tool is for lens-arrays or other setups that project somehow different views of the same sample into a single image. Native installers for Linux, Mac, Win under Releases.

github.com
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Open post
Stephan Saalfeld @herrsaalfeld@mastodon.social
· 18mo ago

If you are using the @EvolutionGnome@floss.social mail client on @ubuntu@ubuntu.social and you are writing e-mails in plain text (as you should to keep simple things simple), you have probably heard people complain to you about forced hard line breaks that look stupid on cell phones. There is no setting in the client to switch that off, but you can

gsettings set org.gnome.evolution.mail composer-word-wrap-length -1

to soft-wrap. Whenever you open the settings dialog again, it will reset to 31 of all things, so don't...

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Open post
Stephan Saalfeld @herrsaalfeld@mastodon.social
· 24mo ago
Replying to
@kristinmbranson@social.coop @steveroyle@biologists.social I ❤ Zotero with browser ext to import from where you found the paper, including the more obscure conference dumps for CV or ML. It auto-downloads the paper and you can nicely annotate it in Zotero. Everything local with cloud sync, so working offline is fine. Overleaf and GoogleDocs integration are excellent, including shared libraries with coauthors. Bib exports are a bit baroque (who wants ISSNs?), so we switched from natbib to Biblatex (with Bibtex, not Biber).
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Open post
Stephan Saalfeld @herrsaalfeld@mastodon.social
· 24mo ago
Replying to
@steveroyle@biologists.social @kristinmbranson@social.coop Try again 🙂. It's great now.
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